STAD  TCGA Publications


Dataset at a glance

No. Samples215
No. mutated genes12251
No. SNVs20836
No. CNAs763

Most Mutated Genes


Gene
Mutated
Samples

SNVs
Inactivating
SNVs

CNAs
View MutationsView Annotations
TP53106106400>>>>
TTN989800>>>>
MUC16505030>>>>
ERBB2416037>>>>
LRP1B373780>>>>
CSMD3363600>>>>
CSMD1333113>>>>
PIK3CA332609>>>>
FAT4323220>>>>
SPTA1303040>>>>
KRAS3012021>>>>
ARID1A3029281>>>>
FLG292920>>>>
CCNE1291029>>>>
HMCN1292950>>>>
PCLO292920>>>>
SYNE1292920>>>>
MYC282026>>>>
BZRAP12727240>>>>
CDH1232330>>>>
LRRK2222200>>>>
PCDH15222240>>>>
PTPRD211219>>>>
FAT3212110>>>>
XIRP2212120>>>>
DNAH5212110>>>>
SMAD4201723>>>>
GPR98202020>>>>
GATA6200020>>>>
CDK6200020>>>>
RYR2202030>>>>
TRPS1191920>>>>
DNAH7191910>>>>
NBEA191920>>>>
SUMO1P1190019>>>>
DMD181810>>>>
OBSCN181850>>>>
ERBB4181800>>>>
CUBN181830>>>>
NEIL2181118>>>>
GLI3181810>>>>
CDKN2A186412>>>>
GATA4180018>>>>
RYR3181810>>>>
PREX2181830>>>>
USH2A171710>>>>
DCLK1171730>>>>
NRXN1161620>>>>
APC1616130>>>>
FAT2161620>>>>
PCDH10161600>>>>
LAMA1161610>>>>
KIF2B161600>>>>
NAV3151510>>>>
ZFHX4151520>>>>
FGFR2152013>>>>
FGF19150015>>>>
LRP2151530>>>>
CNTNAP5151500>>>>
MRPS18A150015>>>>
ZNF804B151510>>>>
CRTC3150015>>>>
DNAH11151520>>>>
RYR1151510>>>>
SDK1141400>>>>
CNTNAP2141400>>>>
OXCT114509>>>>
SLITRK6141400>>>>
NALCN141420>>>>
TLR4141400>>>>
FMN2141410>>>>
CPM140014>>>>
RELN141440>>>>
COL12A1141420>>>>
FLG2141410>>>>
DNAH9141410>>>>
UTRN131300>>>>
APOB131310>>>>
UNC79131310>>>>
CD44131012>>>>
FBN1131300>>>>
SCN3A131310>>>>
KIAA1109131320>>>>
ZNF536131310>>>>
MUC17131310>>>>
DCC131300>>>>
TOMM20130013>>>>
MUC6131350>>>>
SLIT2131310>>>>
CYLC1131310>>>>
ADAMTS16131320>>>>
RHOA131300>>>>
RIMS2131320>>>>
EGFR132011>>>>
HRNR131320>>>>
MYO3A121220>>>>
MACROD2121011>>>>
EDNRB121230>>>>
PXDNL121200>>>>
PTPRT121220>>>>

Mutations plot


Most Mutated Pathways

Gene SetNo. GenesDatabaseMutated Samples SNVsInactivating SNVsCNAsTop 5 Genes
Pathways in cancer - Homo sapiens (human)329KEGG207731126201View
MAPK signaling pathway - Homo sapiens (human)269KEGG1894338387View
Endometrial cancer - Homo sapiens (human)52KEGG18727668104View
Focal adhesion - Homo sapiens (human)199KEGG1854675862View
Melanoma - Homo sapiens (human)71KEGG1852686388View
Pancreatic cancer - Homo sapiens (human)72KEGG18326466113View
Colorectal cancer - Homo sapiens (human)84KEGG1823017470View
Small cell lung cancer - Homo sapiens (human)86KEGG1792926597View
Prostate cancer - Homo sapiens (human)89KEGG17826853120View
Chronic myeloid leukemia - Homo sapiens (human)75KEGG1782546091View
Calcium signaling pathway - Homo sapiens (human)177KEGG1773922855View
Regulation of actin cytoskeleton - Homo sapiens (human)213KEGG1773394077View
Cell cycle - Homo sapiens (human)125KEGG1762526597View
Olfactory transduction - Homo sapiens (human)389KEGG176637420View
Non-small cell lung cancer - Homo sapiens (human)54KEGG17621955118View
Wnt signaling pathway - Homo sapiens (human)150KEGG1753207029View
Glioma - Homo sapiens (human)65KEGG1742355873View
Neurotrophin signaling pathway - Homo sapiens (human)126KEGG1722905630View
Bladder cancer - Homo sapiens (human)42KEGG17219352107View
ErbB signaling pathway - Homo sapiens (human)87KEGG16117916105View